RnoEX0101076 @ rn6
Exon Skipping
Gene
ENSRNOG00000029336 | Zfp180
Description
zinc finger protein 180 [Source:RGD Symbol;Acc:631380]
Coordinates
chr1:80920747-80929230:+
Coord C1 exon
chr1:80920747-80921087
Coord A exon
chr1:80923779-80923859
Coord C2 exon
chr1:80929156-80929230
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTTTTGTTTGTGCAGCTT
3' ss Score
7.15
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTCCGGGTTTAGCCGGCAGCGCAGCCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGAGTGTGTGTGTGTATGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGAAGGCGCCTTCAGTGGCCCGGCTTTGTGGCTGGGCTCAGTCTGCACGGAGCGACCTAGCGGATGCTGACTCGAAGTGGAGGCCAGACCCCGGCCACTCGAATCATGTCGGATGTGCTTCAGGATCGGGGCAGGAAGCGGTGAGCCCCATTTCGTTCTGACGTTGAGTCGTCAGCGGCTCAGACCCGCCCCAGCCCACACCAAGGGCTCTCGGACCTGCAG
Seq A exon
CTTGGCACCACGCCACACCCGGAGGGGACCATGGAGCAGCAAGATGATGAGTCCCCGGAGACCCTGCAGGCCTGTGTGGAG
Seq C2 exon
AACTTTGTTCTACCCCAAGAGATGATCATCGAAGTGGAGGGAGAAGATGCTGGGTCACTGGACATCTTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029336-'1-2,'1-0,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.941 C2=0.627
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGATGTGCTTCAGGATCG
R:
TCCAGTGACCCAGCATCTTCT
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]