HsaEX0073140 @ hg38
Exon Skipping
Gene
ENSG00000157429 | ZNF19
Description
zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]
Coordinates
chr16:71478879-71484748:-
Coord C1 exon
chr16:71484589-71484748
Coord A exon
chr16:71482082-71482143
Coord C2 exon
chr16:71478879-71479005
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTTTCTTCCCTCAGCCT
3' ss Score
9.91
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCTCTGAGGATCCCCGGGTGGAAACTCCTCCCGGGAGTAAAACCACACAACCACTGAGAAGACCGCTCCGGCATCCTAGAGAGTACGCGTGTGAGCCTGGGTGCAAGGCCAAAGTAGTGACGCACTTCCGTTCACGCACCGCTTTCTGTTTTTCCTGAG
Seq A exon
CCTTTGCCTGCTAAGAGGGAGACCAGGTCATGGCAGCCATGCCTCTGAAAGCTCAATACCAG
Seq C2 exon
GAGATGGTGACCTTCGAGGATGTGGCTGTGCACTTCACCAAGACAGAATGGACTGGCCTTTCTCCTGCCCAGAGGGCCCTGTACAGAAGTGTGATGTTGGAGAATTTTGGGAACCTGACTGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157429_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCAAAGTAGTGACGCA
R:
ACTTCTGTACAGGGCCCTCTG
Band lengths:
146-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development