HsaALTA1064144-1/2 @ hg38

Alternative 3'ss

Gene

ENSG00000157429 | ZNF19

Description

zinc finger protein 19 [Source:HGNC Symbol;Acc:HGNC:12981]

Coordinates

chr16:71478970-71482136:-

Coord C1 exon

chr16:71482082-71482136

Coord A exon

NA

Coord C2 exon

chr16:71478970-71479005

Length

0 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGC

5' ss Score

9.6

3' ss Seq

GCAGGAACCTGTTGTTTTAGGAG

3' ss Score

3

Exon sequences

Seq C1 exon

CTGCTAAGAGGGAGACCAGGTCATGGCAGCCATGCCTCTGAAAGCTCAATACCAG

Seq A exon

NA

Seq C2 exon

GAGATGGTGACCTTCGAGGATGTGGCTGTGCACTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000157429-20-30,20-29-1/2

Average complexity

Alt3

Mappability confidence:

NA

Protein Impact

Protein isoform when splice site is used (Ref)

No structure available

Features

Disorder rate (Iupred):

  C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF0135222=KRAB=WD(100=95.3)

Main Inclusion Isoform:

ENSP00000288177

Main Skipping Isoform:

ENSP00000462021

Other Inclusion Isoforms:

ENSP00000454549, ENSP00000454862, ENSP00000454864, ENSP00000455575, ENSP00000455796, ENSP00000458105, ENSP00000462566, ENSP00000463741

Other Skipping Isoforms:

ENSP00000456143

Associated events

• HsaALTA1064144-2/2
• HsaEX0073140
• HsaINT0186379

Conservation

Mouse

(mm10)

chr8:110083657-110083779

ALTERNATIVE

MmuALTA0020689-2/5

(Zfp612)

Mouse

(mm9)

No conservation detected

Rat

(rn6)

chr19:41565965-41566091

ALTERNATIVE

RnoALTA0045778-2/3

(Zfp612)

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

chrUn_JH376407:90797-90798

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

CCAGGTCATGGCAGCCAT

R:

GAAGTGCACAGCCACATCCTC

Band lengths:

76-171

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]