HsaEX0073171 @ hg38
Exon Skipping
Gene
ENSG00000166261 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr11:123724177-123728262:-
Coord C1 exon
chr11:123728133-123728262
Coord A exon
chr11:123727476-123727595
Coord C2 exon
chr11:123724177-123726991
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTTTCCCTCTCTTGAGCAGCAT
3' ss Score
5.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGACTGGTAACGTTCAAGGATGTGGCCGTATGCTTTTCCCAGGACCAGTGGAGTGATCTGGACCCAACACAGAAAGAGTTCTATGGAGAATATGTCTTGGAAGAAGACTGTGGAATTGTTGTCTCTCTGT
Seq A exon
CATTTCCAATCCCCAGACCTGATGAGATCTCCCAGGTTAGAGAGGAAGAGCCTTGGGTCCCAGATATCCAAGAGCCTCAGGAGACTCAAGAGCCAGAAATCCTGAGTTTTACCTACACAG
Seq C2 exon
GAGATAGGAGTAAAGATGAGGAAGAGTGTCTGGAGCAGGAAGATCTGAGTTTGGAGGATATACACAGGCCTGTTTTGGGAGAACCAGAAATTCACCAGACTCCAGATTGGGAAATAGTCTTTGAGGACAATCCAGGTAGACTTAATGAAAGAAGATTTGGTACTAATATTTCTCAAGTGAATAGTTTTGTGAACCTTCGGGAAACTACACCCGTCCACCCCCTGTTAGGGAGGCATCATGACTGTTCTGTGTGTGGAAAGAGCTTCACTTGTAACTCCCACCTTGTTAGACACCTGAGGACTCACACAGGAGAGAAACCCTATAAATGTATGGAATGTGGAAAAAGTTACACACGAAGCTCACATCTTGCCAGGCACCAAAAGGTTCACAAGATGAACGCGCCTTACAAATATCCCCTAAACCGGAAGAATTTGGAAGAGACCTCCCCTGTGACACAGGCTGAGAGAACTCCATCAGTGGAGAAACCCTATAGATGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166261-'25-22,'25-21,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.182 A=0.805 C2=0.230
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=93.2)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0009621=zf-C2H2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGGATGTGGCCGTATGC
R:
ACCTGGATTGTCCTCAAAGACT
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development