RnoEX0101106 @ rn6
Exon Skipping
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44063498-44068003:+
Coord C1 exon
chr8:44063498-44063586
Coord A exon
chr8:44065072-44065191
Coord C2 exon
chr8:44065528-44068003
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTGTCTCTTGAGCAGCAT
3' ss Score
6.82
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGTTCCAGTGTCCCAGCATGCAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTCAG
Seq A exon
CATTTCCAATTCCCAGACTAGATGATCCCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGAGTCCATGAATCTCAAGAACCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAG
Seq C2 exon
GAGACATGAGTGAAGCCGAGGAAGAATGTGTTGAGCAACAAGATACAAACAAGTCTATTTTGGCAAACACAGAAATTCACCAGACTCCAGATTGGGAAATAGTCATTGAGGATAATACCAGTAGACTTAATGAAAGATTTGGTACAAATGTTTCTAAAGTCAATAGCTTCACAAATATTAGGAAAACTATGCCTGTCCACTCCCAGTCAGGGAGACAGCATCATTGCCCTCTATGTGCAAAAAGCTTCACATGTAATTCTCATCTTATTAGGCACTTAAGAACTCACACAGGAGAAAAACCCTATAAATGTATGGAGTGTGGGAAAAGTTACACACGGAGTTCACATCTAGCGAGGCACCAGAAAGTCCATAAGGTGAACACTCCTCATAAACATCCTCCAAACCGGAAGACTGTGGATGCCTCTCAAGTCCAGTCTGAGGCAACTACCCGTGTGGAGAAACCATATACCTGTGATGATTGTGGAAAGCACTTCCGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.780 C2=0.321
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=8.0),PF0009621=zf-C2H2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=8.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCAGAGATGGTTGCTCT
R:
TGGGAGTGGACAGGCATAGTT
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]