HsaEX0073178 @ hg19
Exon Skipping
Gene
ENSG00000160321 | ZNF208
Description
zinc finger protein 208 [Source:HGNC Symbol;Acc:12999]
Coordinates
chr19:22115483-22170113:-
Coord C1 exon
chr19:22170018-22170113
Coord A exon
chr19:22157531-22157609
Coord C2 exon
chr19:22115483-22116039
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTATTTCTTTTCAGTTA
3' ss Score
9.57
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAGGAAGGAAAAGAGTCCTGGAATATGAAGAGACATGAGATGGTGGAAGAATCCCCAG
Seq A exon
TTATATGTTCTCATTTTGCTCAAGATCTTTGGCCAGAGCAGGGCATAGAAGATTCTTTCCAAAAAGTGATATTGAGAAG
Seq C2 exon
ATACAAGATTCATCATCATGCCTGTGAGCTGGGTCCAATAATGAATCACCATCCTACTTGTGGCCAAATGCATATATGACAGTTACAACTCTAACTGCAGACTGCATCGGCATGTAAAATTTAGGTCACCAGTGGGCTCTCTCCATGTTTGAATGTGGTGATTCTAATGGTCAGCGAGGTGTGCATAGGAGAGTCACAATCTCATCTTCAGGTGGGCCTTGTATCAGCACTCTCTCTACTACCTTAAGACTGTATGACACATGGGTGAGCTAAAAATGTTCTGTGACCTTTGTACAAGTAAAAGACACAAGACCTTGTTTGTTGTCCTACCCCTCACTATGTGAGTAAAAAATTGCTTCTATCAGCTGGGTTTATGTATGAGAATCATCATCACGCTTTTGAGCAGGGCTCATGTATGTGACACAAAGCCCACTGTAAACAGGGCCTGTGAAAAAGAGTAGAGGCACATTACCTAGATGCTGGGCCCAGTGATATAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160321_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGGTGGAAGAATCCCCA
R:
AACATGGAGAGAGCCCACTGG
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)