HsaEX0073178 @ hg38
Exon Skipping
Gene
ENSG00000160321 | ZNF208
Description
zinc finger protein 208 [Source:HGNC Symbol;Acc:HGNC:12999]
Coordinates
chr19:21932958-21987311:-
Coord C1 exon
chr19:21987216-21987311
Coord A exon
chr19:21974729-21974807
Coord C2 exon
chr19:21932958-21933237
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTATTTCTTTTCAGTTA
3' ss Score
9.57
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTATTGCTGCCTTTAAGCCAGACCTGATCATTTTTCTGGAGGAAGGAAAAGAGTCCTGGAATATGAAGAGACATGAGATGGTGGAAGAATCCCCAG
Seq A exon
TTATATGTTCTCATTTTGCTCAAGATCTTTGGCCAGAGCAGGGCATAGAAGATTCTTTCCAAAAAGTGATATTGAGAAG
Seq C2 exon
ATACAAGATTCATCATCATGCCTGTGAGCTGGGTCCAATAATGAATCACCATCCTACTTGTGGCCAAATGCATATATGACAGTTACAACTCTAACTGCAGACTGCATCGGCATGTAAAATTTAGGTCACCAGTGGGCTCTCTCCATGTTTGAATGTGGTGATTCTAATGGTCAGCGAGGTGTGCATAGGAGAGTCACAATCTCATCTTCAGGTGGGCCTTGTATCAGCACTCTCTCTACTACCTTAAGACTGTATGACACATGGGTGAGCTAAAAATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160321_MULTIEX1-6/6=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGGTGGAAGAATCCCCA
R:
AACATGGAGAGAGCCCACTGG
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development