HsaEX0073199 @ hg19
Exon Skipping
Gene
ENSG00000159885 | ZNF222
Description
zinc finger protein 222 [Source:HGNC Symbol;Acc:13015]
Coordinates
chr19:44529494-44531301:+
Coord C1 exon
chr19:44529494-44529630
Coord A exon
chr19:44530178-44530238
Coord C2 exon
chr19:44531175-44531301
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTTCTTTTTCCCCAGCCC
3' ss Score
8.56
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GTTGCTATTTCATTTACCACAGTAGTTTGAGTCATTTCCACATCTTGCGAGTCCTTCCGAACGAGTCTCCTTTCCTTGGGGCTCGCAACCACCCAATGATCGATTCAGGAGAAAAGAAGCCTGGGCGGAGAGCAGAG
Seq A exon
CCCGACCTTTCTAAAAGAGCTGCAGGAAGGGACTTCTTGGCTACTGATGGCAAAGCTCTAC
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGATCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAACTTCAGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159885-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTCCGAACGAGTCTCCT
R:
CCAGCTCCTCCTCAGTGAAGA
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)