HsaEX0073199 @ hg38
Exon Skipping
Gene
ENSG00000159885 | ZNF222
Description
zinc finger protein 222 [Source:HGNC Symbol;Acc:HGNC:13015]
Coordinates
chr19:44025400-44027149:+
Coord C1 exon
chr19:44025400-44025478
Coord A exon
chr19:44026026-44026086
Coord C2 exon
chr19:44027023-44027149
Length
61 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTTCTTTTTCCCCAGCCC
3' ss Score
8.56
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAACGAGTCTCCTTTCCTTGGGGCTCGCAACCACCCAATGATCGATTCAGGAGAAAAGAAGCCTGGGCGGAGAGCAGAG
Seq A exon
CCCGACCTTTCTAAAAGAGCTGCAGGAAGGGACTTCTTGGCTACTGATGGCAAAGCTCTAC
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCTGTGATCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTTGAGAACTTCAGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159885_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAACCACCCAATGATCGAT
R:
TCTCGGTACAGCTTCCTCTGG
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development