HsaEX0073237 @ hg19
Exon Skipping
Gene
ENSG00000196793 | ZNF239
Description
zinc finger protein 239 [Source:HGNC Symbol;Acc:13031]
Coordinates
chr10:44051792-44070066:-
Coord C1 exon
chr10:44069988-44070066
Coord A exon
chr10:44065622-44065730
Coord C2 exon
chr10:44051792-44053619
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCTTGAGCCTCCTTTTCCAGCCC
3' ss Score
5.02
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTGTATTTCGGGGCCCTAGGCGCGCGAGCGGTCAGCATCCGGAATCTGGCCCCTGCAGGCGTGGGGTTCCACGTGGGAG
Seq A exon
CCCTCTTCCTCAGAATGGAGACCAGTGACCTTGAACAGAAAGCTTGGGAGACAGCACCCATCCTTACCTTCATCTTTACCCTCATCCTTCCCCACTGGTGACAAGTTGG
Seq C2 exon
GAGACTTGAATGAAAATTCTGTGGAGAATCTTCAGCAGAAAACACTTCAGGATCTGTTACATGAGCTTTCCTCCTGGCTAGTTTTGGAAGGCATGGCCAGTACAATTACTGGAAGTCAGGATTGTATTGTGAATCATCGAGGGGAAGTGGATGGGGAGCCTGAACTAGATATTTCCCCTTGTCAACAGTGGGGAGAAGCATCTTCTCCTATTTCCAGAAACAGGGACAGTGTGATGACTCTTCAAAGTGGTTGTTTCGAAAACATTGAAAGTGAAACATATTTGCCTTTGAAAGTCTCAAGCCAAATAGACACACAAGACTCTTCAGTGAAGTTCTGTAAGAATGAGCCTCAGGATCATCAGGAAAGCAGACGTCTCTTTGTAATGGAAGAAAGCACTGAGAGAAAAGTGATAAAGGGGGAAAGTTGTTCAGAGAACCTTCAAGTTAAACTGGTGTCTGATGGACAAGAACTGGCCTCGCCATTGTTAAATGGTGAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196793_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAGCATCCGGAATCTG
R:
GCTTCTCCCCACTGTTGACAA
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)