HsaINT0186571 @ hg19
Intron Retention
Gene
ENSG00000196793 | ZNF239
Description
zinc finger protein 239 [Source:HGNC Symbol;Acc:13031]
Coordinates
chr10:44069085-44070065:-
Coord C1 exon
chr10:44069988-44070065
Coord A exon
chr10:44069126-44069987
Coord C2 exon
chr10:44069085-44069125
Length
862 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CCCTAACTCTGCCTTTCCAGGAA
3' ss Score
9.3
Exon sequences
Seq C1 exon
TGTATTTCGGGGCCCTAGGCGCGCGAGCGGTCAGCATCCGGAATCTGGCCCCTGCAGGCGTGGGGTTCCACGTGGGAG
Seq A exon
GTGAGACTGGCCGGGCTTCCCCAGCCGCTGGCAGAGGCGTTCAGGGGTCAGGAAATGGGTGTGCCGCGGGTAAGGCGCTGGGCCGCCGAGCTGCGGAAGCCGGGAGGGCGGCGATGGTAGGGCACGCGACCAGCGGAGGCGCGGCCCGCGGCGGCACGTGTGTCCCGGCGCCGCATTTCCGAGCTGCTGCGCCCCCGGGGCCGGGCTGCGGCCACACCGAAGCCTGTGGGGCCCTGCAGCTGAGCGGCCGCGCCTCCGATGGCCCCTCCTCCCTCCTGGCCGAGCTCTGGCCTGGGCCGGCTGGGGGCTTCGTGGTTGGCCACGCCGGCCTTTTCCTCGCCTGTGACGGGCGTTATTGCAGGGGGGTTTTCGGTGGACGTTAGGCGACGGACGGGGGCTCCTGTAAGAGACTGAGGTTTCTGTCCGCAGCACTGCCTTCGCTGAAAAGAGCTTGCATCTGAGCCCCCGCACCGCAGGAACGAGCCAGGCTCCTGAGAATGAGGTCGGGGAAGGCGTCTTGGGCAACCGAAATCCATCCCGAGAAGCTTCTCCTCTTAACTAGAACTTTAGGACAGAGATCGGGAAAGTCAGAGGAAATGGGCACGGCTTCGAGCTGCCGGCGGCTGCGGAATTTACCTAGCCTCTTGGTTTTGGGGGGAAAACTTGGCTTGTTTAATCGAAAGCCCTGTGGAGAGAGATGAAGGTGGTGACAGAAAATGCTTCACCTCTCACCTGATGGAGGGAGTGTGGGTGGAAGTGACTGAAGAAGCGTCAGAGGCAGGAGCGGAGTAACTTTTTCCCCGCAGTCTTGCTGGACTTGATTTTCATGGCTTTTTCTCTTTCCCTAACTCTGCCTTTCCAG
Seq C2 exon
GAATCCATCCCCTCTGGGAGTAAGAAATGACCAGGGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196793-ZNF239:NM_001099282:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)