HsaEX0073240 @ hg38
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr10:37803833-37833116:-
Coord C1 exon
chr10:37833025-37833116
Coord A exon
chr10:37831232-37831312
Coord C2 exon
chr10:37803833-37803943
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTATACCCATATTCACAGTGG
3' ss Score
3.96
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGGAAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACA
Seq A exon
TGGAATCTGAAGCTTATAAAAGTTGAATGACAGCAGCATTAAACATATATGTGAAGAGTCCCCGATGTTTGTAGACCTTAT
Seq C2 exon
CATTGAGAACTGATGTGCCTTCACAGGAAACTTGGCCCGTGTGTTTCCAGGATTCTTGATGTTTCTTCTGAGCTCCAGGGTCAGGCAGTATGATTGAAGTTTCTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX1-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGTGTTAGAGAGCAGCC
R:
TCATACTGCCTGACCCTGGAG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development