HsaEX0073240 @ hg19
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]
Coordinates
chr10:38092761-38122044:-
Coord C1 exon
chr10:38121953-38122044
Coord A exon
chr10:38120160-38120240
Coord C2 exon
chr10:38092761-38092871
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTTATACCCATATTCACAGTGG
3' ss Score
3.96
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGGAAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACA
Seq A exon
TGGAATCTGAAGCTTATAAAAGTTGAATGACAGCAGCATTAAACATATATGTGAAGAGTCCCCGATGTTTGTAGACCTTAT
Seq C2 exon
CATTGAGAACTGATGTGCCTTCACAGGAAACTTGGCCCGTGTGTTTCCAGGATTCTTGATGTTTCTTCTGAGCTCCAGGGTCAGGCAGTATGATTGAAGTTTCTAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGTGTTAGAGAGCAGCC
R:
TCATACTGCCTGACCCTGGAG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)