HsaEX0073241 @ hg19
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]
Coordinates
chr10:38064794-38122044:-
Coord C1 exon
chr10:38121953-38122044
Coord A exon
chr10:38092761-38092871
Coord C2 exon
chr10:38064794-38065503
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCCAACATTGTTATTCACAGCAT
3' ss Score
4.96
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGGAAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACA
Seq A exon
CATTGAGAACTGATGTGCCTTCACAGGAAACTTGGCCCGTGTGTTTCCAGGATTCTTGATGTTTCTTCTGAGCTCCAGGGTCAGGCAGTATGATTGAAGTTTCTAAGCCAG
Seq C2 exon
CTCAGGTTTCAGCTCCTCGGAAGAAAGCAGTTCTTGTGAAGTAAGAAGAAGGCGCCCTAGGAACAGGAATCCCACCTTGAAGATTGCTTCTCTAACCTGAACGTTGTCAGCCCAACTTCAGAGCAAAGTCAGGAAACTGCCAGAAAGGGCAGAGCCTGACAGTTTGCACAGCCTGAAGTAATTCTTCCTCCTGCTCAGAATGAGTGATGCTCTGTAAATGTTATCACATCCAGAAGGTCTCCCCACTATGATGAAAGGTTTGGACCACGTCTCAGAAAAGATATGTGACTGGACTGAGTGGTGGAAAGGGGTATGCTGTGGAAATATTAATCTTGGAGGGTTGGTGTGGGCATGGTCTGCAGGGAGAGATCACTGGGCATAGCTGGAGGAGTTCTATCTCCAGTCTTTAACCAACATGCCCCACATTCAGTCTCCATGGTCTTTGTCCAGATTCTGAGCTGCTCTCACGCCATGTCCATTGTGATATGGGCCCTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGTTAGAGAGCAGCCAG
R:
TGTGCAAACTGTCAGGCTCTG
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)