HsaEX0073251 @ hg38
Exon Skipping
Gene
ENSG00000175395 | ZNF25
Description
zinc finger protein 25 [Source:HGNC Symbol;Acc:HGNC:13043]
Coordinates
chr10:37957420-37971807:-
Coord C1 exon
chr10:37971708-37971807
Coord A exon
chr10:37967917-37967939
Coord C2 exon
chr10:37957420-37957546
Length
23 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTGGTGTCATATAGAAG
3' ss Score
5.23
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGATTCCTGGGGCTGCCAGCTAAGGTCCCTTATGATTTCTGCTCTGGCTTTGCAGTTTTCAGCCTTTCCCAAGAGCAGCAGAAAATGAACAAGTTCCAG
Seq A exon
AAGAATCCATTGCCAAATTCAAG
Seq C2 exon
GGACCCGTGACATTAAAGGATGTTATTGTGGAATTCACCAAGGAAGAATGGAAGTTACTGACCCCTGCTCAGAGGACTCTGTATAAGGATGTGATGCTGGAAAACTATAGTCACCTTGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175395-'3-10,'3-5,6-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=1.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTTTCAGCCTTTCCCA
R:
AGCAGGGGTCAGTAACTTCCA
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development