HsaEX0073272 @ hg19
Exon Skipping
Gene
ENSG00000198393 | ZNF26
Description
zinc finger protein 26 [Source:HGNC Symbol;Acc:13053]
Coordinates
chr12:133563056-133583754:+
Coord C1 exon
chr12:133563056-133563459
Coord A exon
chr12:133564251-133564354
Coord C2 exon
chr12:133583628-133583754
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATCCAATGCCTGTATTTCAGCCT
3' ss Score
4.15
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGACCAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCGAGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACGCGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCCTGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCCCCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGG
Seq A exon
CCTGTAACTCACATGGGAGGTCTAAACTGGAAATACATAAAGACACCTTATTGTATTCGTGGAAGCTCAGAGTGTGACCAACTGGAACCCTCAAGAGGACCGAG
Seq C2 exon
GGATTATTGTCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTACAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198393_MULTIEX1-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGTGTTGGGCGAGAG
R:
TTCATCCCAGGTGAACTCCAT
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)