HsaEX0073274 @ hg19
Exon Skipping
Gene
ENSG00000198393 | ZNF26
Description
zinc finger protein 26 [Source:HGNC Symbol;Acc:13053]
Coordinates
chr12:133563056-133583754:+
Coord C1 exon
chr12:133563056-133563459
Coord A exon
chr12:133582643-133582845
Coord C2 exon
chr12:133583628-133583754
Length
203 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTTCATAATAGATT
3' ss Score
9.9
5' ss Seq
CCTGCAAGT
5' ss Score
-0.23
Exon sequences
Seq C1 exon
GCGGAGGCGCGGAGCTAAGCGGCTCGGATTATCCTGGGCAGACCAGAGACTTGACCAGCTAAACACTTCCGTCGGTCCGGGGCGTGGACGGGGCCAGATCAGCCTCCTGCTCTCCCGAGTCAGGGCCACGGAAAGGCACAAATCCATCCGTGCGACTCCTGGTACCCAGACCGGGAGGTTGTCTAGTCACGCGCGGTCTGTGTTGGGCGAGAGCTGAGGAGCCGGCGTCCCTGCCAACGACTCGGCCCCGGGACGGTCAGGAGCCTGGGGCCCTGGTCCCGCACCTGTCTTCGGGCGGACGCATCCCTCACGGTCTCTCCGCAGCCCGCGGGTCCTGCCCCCGCAGGCAGCGCGCGAACGTGGGCGTGGGGATGGCCACCAGTTTCCGGACAGCTTCGTGCTGG
Seq A exon
ATTTGCCAGTTTTTCAGTTGGGCATATACAGAAACTCCATTTCTGAATTTCCCTGCTGTTCCCTCCCAGCCCCCACTCTTTGCTGTTGCTTAGAATGCAGATGTGATGACTAGAGCCATCTTAGACTGGGTTGCCCTGGAAGTGGAAGCCATGTAAGGTGGAGCAAGAGATGGAAGCCCCAGACCAATTGCCTTCAGACTCCT
Seq C2 exon
GGATTATTGTCATTCAAGGATATATCTATGGAGTTCACCTGGGATGAATGGCAGCTACTGGATTCTACACAGAAGTACCTGTACAGAGATGTGATATTGGAAAACTATCATAACCTGATATCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198393_MULTIEX1-3/6=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTTGTCTAGTCACGCG
R:
CCAGTAGCTGCCATTCATCCC
Band lengths:
292-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)