HsaEX0073290 @ hg19
Exon Skipping
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9529181-9529975:-
Coord C1 exon
chr19:9529727-9529975
Coord A exon
chr19:9529442-9529571
Coord C2 exon
chr19:9529181-9529307
Length
130 bp
Sequences
Splice sites
3' ss Seq
ATAATCTTTCCATTCATCAGTGT
3' ss Score
5.26
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTCTTTACAGGGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAGGTATGCAGGAAGTATATCCTTCTCCAAAATATCATACTTGCATCACCAGGTAGACACATTTCCTTCTACACAGAATTATCTTCAGAGCTTCTTAAAGCAAATAAAGCCTCCTTCAAGGACTGAGTCCCTAGTCGAATTCCCGGAAGGAGTGGAGCCTGTCATATTG
Seq A exon
TGTTTATCTAGCATCTGCTCAAGAGTGTGCTGCAGTGGAGGGAAATCAGATGACCTCCCAGTCTGGTTGTGTTACATACAATCATGTGTAAGAAGTGCCATTCAAGCCGTGTCACTGGAGGGGACTGACA
Seq C2 exon
GATTCAGTGACTTTTGATGATCTGGCTGTGGACTTCACCCCAGAAGAATGGACTTTACTGGACCCAACTCAGAGAAACCTCTACAGAGATGTGATGCTGGAGAACTACAAGAATTTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652_MULTIEX1-3/3=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAAGGGTGGTGGCTGACT
R:
GTGAAGTCCACAGCCAGATCA
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)