HsaINT0186642 @ hg19
Intron Retention
Gene
ENSG00000174652 | ZNF266
Description
zinc finger protein 266 [Source:HGNC Symbol;Acc:13059]
Coordinates
chr19:9529438-9529975:-
Coord C1 exon
chr19:9529727-9529975
Coord A exon
chr19:9529572-9529726
Coord C2 exon
chr19:9529438-9529571
Length
155 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
ATAATCTTTCCATTCATCAGTGT
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTCTTTACAGGGACCCAGTCTGCCTTCAAGAAAAGACAGAAGTAGAAAGGGTGGTGGCTGACTGTCTGACAAATTGTTATCAGGTATGCAGGAAGTATATCCTTCTCCAAAATATCATACTTGCATCACCAGGTAGACACATTTCCTTCTACACAGAATTATCTTCAGAGCTTCTTAAAGCAAATAAAGCCTCCTTCAAGGACTGAGTCCCTAGTCGAATTCCCGGAAGGAGTGGAGCCTGTCATATTG
Seq A exon
GTGAGGGTTTGCCTTGAATGTCATCCCAGTATTTCAATATTGATTAATTAGTCTTCCCTCATGGTCCCAACTGCATAGTTTTTATTTTGTTGAGTGTTCTGACACATGGTAAGGGACATGAAAGTATCCTTTGAGATAATCTTTCCATTCATCAG
Seq C2 exon
TGTTTATCTAGCATCTGCTCAAGAGTGTGCTGCAGTGGAGGGAAATCAGATGACCTCCCAGTCTGGTTGTGTTACATACAATCATGTGTAAGAAGTGCCATTCAAGCCGTGTCACTGGAGGGGACTGACAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174652-ZNF266:NM_006631:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGAAAGGGTGGTGGCTGA
R:
GCAGCACACTCTTGAGCAGAT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)