HsaEX0073321 @ hg19
Exon Skipping
Gene
ENSG00000169548 | ZNF280A
Description
zinc finger protein 280A [Source:HGNC Symbol;Acc:18597]
Coordinates
chr22:22868060-22874613:-
Coord C1 exon
chr22:22874432-22874613
Coord A exon
chr22:22871483-22871574
Coord C2 exon
chr22:22868060-22870025
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTTTTAAATTTTTTGTAGAGA
3' ss Score
6.53
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGAAAGGACTTTGAAGAGCAAGCGGCGTTGTTCGCCTGCGGAAGCAGTGCTGCCGGTCTCTGGACAAATTTCTCCCGGAGGTGGAGACAAGGAAGCTCCAGCTTCGCTTTCCCTTGTGGCCCAGAGTGGAACATACTGAGCTGCACTGAATCATCTGGATGCACTCGCAACTTTAGGAACTG
Seq A exon
AGATGGGTCTTGCTATGTTGCCCAGGCTGGTCTCGAGCTCCTGACCTCAAGCAATCCTCCCGCCTTGGCCTTACAAAGTGTTGGGATTACAG
Seq C2 exon
GTGGCAATTTGTAAAAAGACAGCTCTGGAAGTTGAAGAGACCAGTGGCTTCAAGCAAAAAGTAAATTGAAAATGGGAGATATCTTTTTGTGTAAGAAAGTGGAATCACCAAAGAAGAATTTGAGAGAATCCAAACAAAGGGAGGAGGATGATGAAGATCCAGATCTGATCTATGTTGGGGTGGAGCATGTACATAGAGATGCTGAAGTTCTCTTTGTCGGGATGATTTCAAATTCAAAACCAGTCGTTTCAAACATTTTGAACAGAGTCACCCCAGGCTCAAAGTCAAGAAGAAAGAAAGGCCACTTCCGTCAATATCCTGCTCACGTGTCGCAGCCTGCAAATCATGTGACCTCTATGGCAAAAGCCATCATGCCCGTTTCTCTGTCTGAGGGGCGATCGACAGATAGTCCTGTCACTATGAAGTCTTCATCTGAACCTGGTTATAAAATGAGCTCACCACAAGTTGTTTCTCCCAATTACTCAGATTCGCTCCCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169548-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138361=DUF4195=WD(100=31.9),PF134651=zf-H2C2_2=WD(100=5.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGTCTCTGGACAAATT
R:
GCCACTGGTCTCTTCAACTTCC
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)