HsaEX0073321 @ hg38
Exon Skipping
Gene
ENSG00000169548 | ZNF280A
Description
zinc finger protein 280A [Source:HGNC Symbol;Acc:HGNC:18597]
Coordinates
chr22:22516317-22520270:-
Coord C1 exon
chr22:22520089-22520270
Coord A exon
chr22:22517147-22517238
Coord C2 exon
chr22:22516317-22516903
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATTTTTAAATTTTTTGTAGAGA
3' ss Score
6.53
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGAAAGGACTTTGAAGAGCAAGCGGCGTTGTTCGCCTGCGGAAGCAGTGCTGCCGGTCTCTGGACAAATTTCTCCGGGAGGTGGAGACAAGGAAGCTCCAGCTTCGCTTTCCCTTGCGGCCCAGAGTGGAACATACTGAGCTGCACTGAATCATCTGGATGCACTCGCAACTTTAGGAACTG
Seq A exon
AGATGGGTCTTGCTATGTTGCCCAGGCTGGTCTCGAGCTCCTGACCTCAAGCAATCCTTCCGCCTTGGCCTTACAAAGTGTTGGGATTACAG
Seq C2 exon
GTAAGCCTTGCTGAAGAGGAACCATGGGACTGAGGCAGACCAGGAGCCCAGATGGGGTTAATCTGGGGAAAGAGGCACGCAACGTCCGGGAACAACAAAAGTTCTGAAAAAGAAAAAGGCCTGCTGTGTTCCAGATTCACGGAGCTCAGGATGGCTGCATCAGAGCAACAGAGGAGTTAGCAAGGGCGATGATGACCTAAGGTTCCATGGGGAAATTTAAAGTTTGCTGGTATTTCCTATGAATGAAATGGAAAGTCATTGAAGACTTAAGAGCGAAATATACTTGCTCCCCTGTATATTTTAACAGGGGCATTGGGGCCACCATGGGGAGATCTGACAAAACTTTTAAGACTGGCAACTTCTGCAGTGATCCAGGGAGAGAACATGGTACCTTCCATCAGGGAGGTGGCAGTAGATGTGGAAGAGAGTAGTCAGATTCTGGATATCTTTAAAAGATAGAGCAGACTAGCTTTGCTAATTGATTGGCTGTAGTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169548-'0-3,'0-2,1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGTCTCTGGACAAATT
R:
CCTCAGTCCCATGGTTCCTCT
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development