HsaEX1044959 @ hg38
Exon Skipping
Gene
ENSG00000169548 | ZNF280A
Description
zinc finger protein 280A [Source:HGNC Symbol;Acc:HGNC:18597]
Coordinates
chr22:22511525-22520270:-
Coord C1 exon
chr22:22520089-22520270
Coord A exon
chr22:22516675-22516903
Coord C2 exon
chr22:22511525-22514909
Length
229 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGATATTGTGGTCAGGTA
3' ss Score
4.92
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
AGAAAGGACTTTGAAGAGCAAGCGGCGTTGTTCGCCTGCGGAAGCAGTGCTGCCGGTCTCTGGACAAATTTCTCCGGGAGGTGGAGACAAGGAAGCTCCAGCTTCGCTTTCCCTTGCGGCCCAGAGTGGAACATACTGAGCTGCACTGAATCATCTGGATGCACTCGCAACTTTAGGAACTG
Seq A exon
GTAAGCCTTGCTGAAGAGGAACCATGGGACTGAGGCAGACCAGGAGCCCAGATGGGGTTAATCTGGGGAAAGAGGCACGCAACGTCCGGGAACAACAAAAGTTCTGAAAAAGAAAAAGGCCTGCTGTGTTCCAGATTCACGGAGCTCAGGATGGCTGCATCAGAGCAACAGAGGAGTTAGCAAGGGCGATGATGACCTAAGGTTCCATGGGGAAATTTAAAGTTTGCTG
Seq C2 exon
ATCCAGAGAGAGCAAGTGAGTCTGCCCTGGCAATGACAGACATTTCAAGTCTAGCAAGTCAAAACAAGACCTTTGATCCCAAGAAAGAAAATCCCATCGTGTTACTTAGCGACTTTTACTATGGACAGCATAAAGGAGATGGGCAGCCGGAACAGAAGACTCACACCACCTTTAAATGCCTCAGCTGCGTGAAAGTTCTAAAAAATATTAAGTTTATGAATCACATGAAGCATCATTTGGAATTTGAGAAGCAGAGGAACGACAGCTGGGAAGACCACACCACCTGCCAGCACTGCCACCGGCAGTTTCCCACTCCCTTCCAGCTACAGTGTCACATTGATAGTGTACACATCGCCATGGGGCCCTCTGCTGTCTGTAAAATCTGTGAATTGTCATTTGAAACAGATCAGGTCCTCTTACAACACATGAAGGACCATCATAAGCCTGGCGAAATGCCTTATGTGTGCCAGGTTTGCCATTACAGATCGTCGGTCTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169548_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGGTCTCTGGACAAATT
R:
GTGAGTCTTCTGTTCCGGCTG
Band lengths:
297-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains