HsaEX0073324 @ hg38
Exon Skipping
Gene
ENSG00000056277 | ZNF280C
Description
zinc finger protein 280C [Source:HGNC Symbol;Acc:HGNC:25955]
Coordinates
chrX:130209653-130215333:-
Coord C1 exon
chrX:130215193-130215333
Coord A exon
chrX:130210084-130210135
Coord C2 exon
chrX:130209653-130209715
Length
52 bp
Sequences
Splice sites
3' ss Seq
CAGAAATTTATTTCTCACAGTTC
3' ss Score
4.94
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTGTCGTCGGGGAATTCACAAGTGCATTGAATGTCATTCCAAAATAAAAGATTTTGCAAGCCACTTTTCTATATACATCCACTGCAGTTTTTGCAAGTACAATACTAACTGTAACAAAGCCTTTGTAAATCATATGATGAG
Seq A exon
TTCTGGAGGCTGGAAAGTCCACGATCAAGGTGCCGGCAGATTCGGTGTCTGG
Seq C2 exon
CTCTCATAGCAACCATCCAGGTAAACGGTTTTGTATTTTCAAGAAGCATTCAGGAACTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056277_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000370978fB8095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGTGCATTGAATGTCATTCCA
R:
CCTGGATGGTTGCTATGAGAG
Band lengths:
146-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development