HsaEX0073353 @ hg19
Exon Skipping
Gene
ENSG00000159882 | ZNF283
Description
zinc finger protein 230 [Source:HGNC Symbol;Acc:13024]
Coordinates
chr19:44332354-44335533:+
Coord C1 exon
chr19:44332354-44332433
Coord A exon
chr19:44334272-44334369
Coord C2 exon
chr19:44335470-44335533
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTCTTGGCCTTTTGCCTAGGCT
3' ss Score
5.25
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGAAATCAAGGTTCAG
Seq A exon
GCTGGAGTGCAGTGGCATGATCATGGCTCACTGTAGCCTTGGCCTCCTAGGCTCAAGCGATCCTCCCACCTCAGGCTCCCGAGTACCTGGGACTACAG
Seq C2 exon
GAGAATCTTGACAGTGAATGTGTCTCATTACATTGAATAACAGCTACAGGATGTTCGAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159882-'4-8,'4-6,5-8
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCAGGTTGCCAGATTTC
R:
CAGCTCTCGAACATCCTGTAGC
Band lengths:
143-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)