HsaEX0073353 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43828202-43833626:+
Coord C1 exon
chr19:43828202-43828281
Coord A exon
chr19:43830100-43830217
Coord C2 exon
chr19:43833505-43833626
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTGTTTAAACAGGTT
3' ss Score
10.25
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGAAATCAAGGTTCAG
Seq A exon
GTTCTTGGCCTTTTGCCTAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTGTAGCCTTGGCCTCCTAGGCTCAAGCGATCCTCCCACCTCAGGCTCCCGAGTACCTGGGACTACAG
Seq C2 exon
ATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-1/8=C1-4
Average complexity
ME(1-3[97=98])
Mappability confidence:
100%=100=90%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139001=GVQW=PU(92.1=85.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAGGTTGCCAGATT
R:
CTGTAGTCCCAGCTACTCAGGA
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development