HsaEX0000959 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43828202-43833626:+
Coord C1 exon
chr19:43828202-43828281
Coord A exon
chr19:43831318-43831381
Coord C2 exon
chr19:43833505-43833626
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCATTTGTGTTGATTTACAGGAG
3' ss Score
9.15
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
TGCTGCCAGGTTGCCAGATTTCTAAGAAGGAGTTTGAAGAGGAGAAAAGGATTTTTGCATGTTTAGAAATCAAGGTTCAG
Seq A exon
GAGAATCTTGACAGTGAATGTGTCTCATTACATTGAATAACAGCTACAGGATGTTCGAGAGCTG
Seq C2 exon
ATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-3/8=C1-4
Average complexity
ME(1-3[97=98])
Mappability confidence:
90%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF139001=GVQW=PU(92.1=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGGTTGCCAGATTTCT
R:
AGCTTGCAGTGAGCCAAGATC
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development