HsaEX0073355 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43830100-43835592:+
Coord C1 exon
chr19:43830100-43830217
Coord A exon
chr19:43833505-43833828
Coord C2 exon
chr19:43835505-43835592
Length
324 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGATG
3' ss Score
13.03
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
GTTCTTGGCCTTTTGCCTAGGCTGGAGTGCAGTGGCATGATCATGGCTCACTGTAGCCTTGGCCTCCTAGGCTCAAGCGATCCTCCCACCTCAGGCTCCCGAGTACCTGGGACTACAG
Seq A exon
ATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCACACCCAGCTAATTTTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCATGTTAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTCGGCTTCTCAAAGTGCTGGGATTACAGGCATGAGCCGCCGTGCCTGGCCCTTCTTTACCTATTTCTTAAGGATACATTTCTAGAAGTGAAGTTTTGG
Seq C2 exon
TTCTGGCTTTTCTGGATTCTGTGCTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-4/8=1-5
Average complexity
C2*
Mappability confidence:
96%=75=94%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF139001=GVQW=PU(92.1=85.4)
C2:
PF139001=GVQW=PD(10.0=13.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTTGCCTAGGCTGGAGTG
R:
ATCAGTCATGGTTCTGGAATTGCA
Band lengths:
198-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development