HsaEX1044974 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43833505-43852017:+
Coord C1 exon
chr19:43833505-43833828
Coord A exon
chr19:43840886-43841044
Coord C2 exon
chr19:43846939-43852017
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTATTTTTTAGTAG
3' ss Score
8.92
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCACACCCAGCTAATTTTTTTTGTAGTTTTAGTAGAGACGGGGTTTCACCATGTTAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCACCTCGGCTTCTCAAAGTGCTGGGATTACAGGCATGAGCCGCCGTGCCTGGCCCTTCTTTACCTATTTCTTAAGGATACATTTCTAGAAGTGAAGTTTTGG
Seq A exon
TAGAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAATGCTAGGATTACAGGTGTGGCCCACCGCACCTGGCCAATGACAATCTGTCTTTCCAGCTCAATTGTTGCTTTGATGGAG
Seq C2 exon
ATTTGGAGTCAAAAACGTATGAGACCAAAAAAATATTTTCAGAAAATGATATTTTTGAAATAAATTTTTCCCAGTGGGAGATGAAGGACAAAAGTAAAACCCTTGGCCTTGAGGCATCCATCTTCAGAAATAATTGGAAGTGCAAAAGCATATTCGAGGGACTAAAAGGACATCAAGAGGGATACTTCAGTCAAATGATAATCAGCTATGAAAAAATACCTTCTTACAGAAAAAGTAAATCTCTTACTCCACATCAAAGAATTCATAATACAGAGAAATCCTATGTTTGTAAGGAATGTGGGAAGGCTTGCAGTCATGGCTCAAAACTTGTTCAACATGAGAGAACTCATACAGCTGAAAAACACTTTGAATGTAAAGAATGTGGGAAGAATTATTTAAGTGCCTATCAACTCAATGTGCATCAGAGATTTCATACTGGTGAGAAACCCTATGAGTGTAAGGAATGTGGGAAGACCTTTAGCTGGGGATCAAGCCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-8/8=4-C2
Average complexity
C3*
Mappability confidence:
100%=91=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(92.1=85.4)
A:
PF0135222=KRAB=PD(16.7=55.6)
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACGGGGTTTCACCATGT
R:
TGTCCTTCATCTCCCACTGGG
Band lengths:
249-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains