HsaEX0073356 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43835505-43852017:+
Coord C1 exon
chr19:43835505-43835592
Coord A exon
chr19:43837053-43837132
Coord C2 exon
chr19:43846939-43852017
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACATGGGTTTTTGGTTTTAGGGG
3' ss Score
8.72
5' ss Seq
CTTGTACGT
5' ss Score
5.14
Exon sequences
Seq C1 exon
TTCTGGCTTTTCTGGATTCTGTGCTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGAT
Seq A exon
GGGTTGGTGACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTT
Seq C2 exon
ATTTGGAGTCAAAAACGTATGAGACCAAAAAAATATTTTCAGAAAATGATATTTTTGAAATAAATTTTTCCCAGTGGGAGATGAAGGACAAAAGTAAAACCCTTGGCCTTGAGGCATCCATCTTCAGAAATAATTGGAAGTGCAAAAGCATATTCGAGGGACTAAAAGGACATCAAGAGGGATACTTCAGTCAAATGATAATCAGCTATGAAAAAATACCTTCTTACAGAAAAAGTAAATCTCTTACTCCACATCAAAGAATTCATAATACAGAGAAATCCTATGTTTGTAAGGAATGTGGGAAGGCTTGCAGTCATGGCTCAAAACTTGTTCAACATGAGAGAACTCATACAGCTGAAAAACACTTTGAATGTAAAGAATGTGGGAAGAATTATTTAAGTGCCTATCAACTCAATGTGCATCAGAGATTTCATACTGGTGAGAAACCCTATGAGTGTAAGGAATGTGGGAAGACCTTTAGCTGGGGATCAAGCCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-6/8=5-C2
Average complexity
C2*
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(10.0=13.3)
A:
PF0135222=KRAB=PU(80.0=88.9)
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTTCTGGATTCTGTGCT
R:
TGTCCTTCATCTCCCACTGGG
Band lengths:
175-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development