HsaEX0073356 @ hg19
Exon Skipping
Gene
ENSG00000159882 | ZNF283
Description
zinc finger protein 230 [Source:HGNC Symbol;Acc:13024]
Coordinates
chr19:44339657-44353307:+
Coord C1 exon
chr19:44339657-44339744
Coord A exon
chr19:44341205-44341331
Coord C2 exon
chr19:44351091-44353307
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGGGTTTTTGGTTTTAGGGG
3' ss Score
8.72
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTCTGGCTTTTCTGGATTCTGTGCTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGAT
Seq A exon
GGGTTGGTGACATTCAGGGATGTGGCCATCGACTTCTCTCAGGAGGAGTGGGAATGCCTGGACCCTGCTCAGAGGGACTTGTACGTGGATGTAATGTTGGAGAACTATAGTAACTTGGTGTCACTGG
Seq C2 exon
ATTTGGAGTCAAAAACGTATGAGACCAAAAAAATATTTTCAGAAAATGATATTTTTGAAATAAATTTTTCCCAGTGGGAGATGAAGGACAAAAGTAAAACCCTTGGCCTTGAGGCATCCATCTTCAGAAATAATTGGAAGTGCAAAAGCATATTCGAGGGACTAAAAGGACATCAAGAGGGATACTTCAGTCAAATGATAATCAGCTATGAAAAAATACCTTCTTACAGAAAAAGTAAATCTCTTACTCCACATCAAAGAATTCATAATACAGAGAAATCCTATGTTTGTAAGGAATGTGGGAAGGCTTGCAGTCATGGCTCAAAACTTGTTCAACATGAGAGAACTCATACAGCTGAAAAACACTTTGAATGTAAAGAATGTGGGAAGAATTATTTAAGTGCCTATCAACTCAATGTGCATCAGAGATTTCATACTGGTGAGAAACCCTATGAGTGTAAGGAATGTGGGAAGACCTTTAGCTGGGGATCAAGCCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159882-'9-13,'9-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATTCTGTGCTTCACCA
R:
TGATGTCCTTTTAGTCCCTCGA
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)