BtaEX0041219 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000012522 | ZNF283

Description

zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]

Coordinates

chr18:52380158-52391523:+

Coord C1 exon

chr18:52380158-52380626

Coord A exon

chr18:52382926-52383052

Coord C2 exon

chr18:52389821-52391523

Length

127 bp

Sequences

Splice sites

3' ss Seq

GAGTGGGTTTTTGGTTTTAGGGC

3' ss Score

7.62

5' ss Seq

TGGGTAAGG

5' ss Score

9.08

Exon sequences

Seq C1 exon

AAAGAATCTGCCTGCAATGTGGGAGACCTGGGTTCAGTCCCTGGGTTGGAAAGATCCCCTGGAGAATGGAACAGCTACCCACTCCAGTATTTGTGCCTGAAGAATTCCACGGACAGAGGAACCTGGCAGACTACAGTCCATGGGGTCGCAAAGAATTGGACACGACTGAGCAACTTTCACTTTTATTTTTCTGATTTCAGAGTTAACACAGGTTTGTTGCAAAACATTCACCAATCTGGGAAATGTATAGAAAAGGAAGTTAAAATTATATCCCATAGAGTTAATCATTCTTATTATTTTGATGTCTTTTTATTCAGTTGTTTAAGTCAGGACAGGCTCACTTCAGCACACCTGGACTAAAGCTTCTTTTTCCTTCTGCAGCTCTGGCTTTTCTGGACTCTGTGCTTCACCAATAGAGGAACTCTATGGAGCACTAATTAGTTCCTGGGATTCTAGAACCATGACTGAC

Seq A exon

GGCATGGTGACATTCAGGGATGTGGCCATTGACTTCTCTCAGGAGGAGTGGGAATTTCTGGACCCTGCTCAGAGGGACTTGTATGTGGATGTGATGTTGGAGAACTACAGCAACTTGGTCTCACTGG

Seq C2 exon

ATTTGGAGTCGACATATGAGACAAAAAATACATTATCAAAAAAGGACATTTTTGAAATAAATTTTTCCCAGTGGAAGATAAAGGAAAGAAGTAAAACCATTGAGCTCGAGGCATCCATTTTCAAAAATAATTGGAAGTGTAAGAGCAGATTCAAGGGGCTCCAGGGACACCAAGAGAGATTATTCAGTCAAGTGATAATCAGCTATGAAAAAATGCCCACTTACAAAAAGCATGAATCTCTTATTGCACATCAGAGAACTCCTAATCAAGAAAAACCTTACATTTGTAAGGAATGTGGGAAGGCTTACAGACATGGCTCAAAACTTGTTCAACATGAGAGAATTCATATGGCTAAAAAACATTTTGAATGTAAAGAATGTGGGAAGGACTTTTTAAGTGCCTATCAACTCACTGTGCATCAGAGATTTCATACTGGTGAGAAACCTTATGAATGTAAGGAATGTGGGAAGACCTTTAGTTGGGGATCAAGCCTTGTTAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000012522_CASSETTE1

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.007

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.0),PF127602=Zn_Tnp_IS1595=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSBTAP00000012076