MmuEX6009682 @ mm10
Exon Skipping
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:29846469-29851017:-
Coord C1 exon
chr7:29850942-29851017
Coord A exon
chr7:29846834-29846960
Coord C2 exon
chr7:29846469-29846564
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTGTATCCTTTTAGAGA
3' ss Score
6.76
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
Seq A exon
AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG
Seq C2 exon
GACTTTTTGTTTATCGGCCACATCTGTTCTCCTTGTTGGAAAAAGGACAAGACCCCTGGATGATTTTGAGGGATGAGACAAGGGGACCTTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855-'7-8,'7-6,10-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCGGGCTCTACTTGGTTGA
R:
CTGGATAAGGTCCCCTTGTCTCA
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types