MmuEX6009682 @ mm9
Exon Skipping
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:30631488-30636036:-
Coord C1 exon
chr7:30635961-30636036
Coord A exon
chr7:30631853-30631979
Coord C2 exon
chr7:30631488-30631583
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTGTATCCTTTTAGAGA
3' ss Score
6.76
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
Seq A exon
AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG
Seq C2 exon
GACTTTTTGTTTATCGGCCACATCTGTTCTCCTTGTTGGAAAAAGGACAAGACCCCTGGATGATTTTGAGGGATGAGACAAGGGGACCTTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855-'6-6,'6-4,9-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCGGGCTCTACTTGGTTGA
R:
CTGGATAAGGTCCCCTTGTCTCA
Band lengths:
170-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: