RnoEX6002031 @ rn6
Exon Skipping
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87702730-87710500:+
Coord C1 exon
chr1:87702730-87702804
Coord A exon
chr1:87704421-87704939
Coord C2 exon
chr1:87707440-87710500
Length
519 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTGTCCCGCGGCAGGTA
3' ss Score
6.35
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GAGCTGGCCTCATCAACATAGGAATCAAGAAGAGGACTGACTGGTCACTTTTAGGAGTTTCAAATCATGGCTCAT
Seq A exon
GTAATGACGTTCAGAGATGTGGCCGTAGACTTCTCTCCCGAGGAGTGGGCGTGTCTGAGCCTGGAACAGAGGAGTCTATACAGAGACGTGATGCTGGAGAACTACAGCCACCTCGTCTCCGTGGGTAAGACTCGACCCTAGACATTCCGGGCTTCCTTATTGGCAGCCACTGACTTTCTTTTTTATAAGAAATGTCAGGGGGTTTTCTGACCTGCGTTTATTCTGGAAAACGGCCCGTGTTTTCTGCAGAGATGGTGTCGTCACTGGGGAAGCCCGTGTTCACCGTCCTCCCAGAATGCGTTGTGCTTTTTCTTTGTCCTTCCTGTCCTTGCTGCACTTCCTTTGTTACCAGGGCACCAGCTCAAACTTTTTGGCTTCTCTTCCGTGTGGTCACTACCTGCCTATATTTTATCTTACACGCAGGACTTTGCATTTATCAACCGCATGTGTTCCCTGTGTTGGAAAAAGAACAAGATGCCTGCGTGGATTTGAGCAATGAGACCAGCAGATTTCTCCCGG
Seq C2 exon
ATACAGATTCCGGGTGGCAGATGAAGAAAGTCCTACCAAAAAACAGCATTTTCGGAAGTCGGTTGTCGCGCTGGGAGGTAATGAGAATGGAGAGAAACCAAGGGCTCGAAGGCTCGAGTCCTGGAGTCGATTGGGAAGATAAAGGTCAGGACCAATCACAAAATGAGAATCAAGAGGAACGTCTCAAGCAAATGACACTCACCTGTGACAAATTGCCCCTTTTGAATCTGCTCACAGCTTTTAATCAGTGTCCAAGACTGAATACAGCAGAGAAAGCGAAGGAATTTAAATCTGAAAAATCCTTTAGTTTTGCACCCGAGCCCTCTCAGCTTCAGTTAATCCACACAGACGCGAAATTCCGGGAAGATAAAAGCTGCGGAAAGACCTTTCCTCCTGGCCCTAAACTTCCTCGCTACCGTGCAGTTCCCGCCGGCAAGAAGGCATTTCAGTGTGAGGAATGTGGCAAGGCGTTTAGCTTCCGCTCTAGCCTCACGGGTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043-'13-15,'13-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTCATCAACATAGGA
R:
TTCCTTCGCTTTCTCTGCTGT
Band lengths:
357-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]