MmuEX1028658 @ mm10
Exon Skipping
Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:29824830-29831005:+
Coord C1 exon
chr7:29824830-29824953
Coord A exon
chr7:29825692-29825787
Coord C2 exon
chr7:29828121-29831005
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTATCTCTCACGTAGGGC
3' ss Score
9.33
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTAATGACATTCAGAGATGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAAGAGTTTATACCGAGATGTCATGCTGGAGAACTACAGCCACCTTGTCTCAGTGG
Seq A exon
GGCTTTGCATTTATCAACCGCATGGGTTCCCTGTGCCAGAGAAAGAGCAAGATGCCTGCATGGATTTGGGCAATGAGCCTAGCAGATTTTGCCCAG
Seq C2 exon
ATACAGATTCCCGGTGGCAGATGAAGAAAGCCCTACGGACAAACAGCACGTGCGCAACTCGGTTGTCCCACTGGGAGGGAATGGGAATGGAGCCAAAGCACGGGCTTGCAGCCTCGTGTCCTGCAGCCGACTGGGAAGGCAAAGGTCAGGAGCCACCACAAAGTGAGAATCAAGAGGAAACGCTCCAGCAAATGACACTCGCTTGTGACAAACTGCCCCTTCTGAATCTGCTCACAGCTCTTCAGTGTCCAAGACTGAAGCTAGCAGAGAAAACAAAGGAAGTCAAATCGGAAAAATCCTTTAGTTTTGCACCAGAGCCCGCTCAACTTCAGCTCATTCACACAGGTGAGAAATTTGAGGAAGATAAAAAACGCGGAAAGACCTTCCCTCCTGGCCCTAAGCTTACTCGCTACCGAGCAGTTCAGGATGGCAAGAAGGCATTTCAGTGTGACGAGTGTGGCAAGGCTTTCAGCTTCCGTTCTAGCCTCACTGGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427-'11-11,'11-10,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.152 C2=0.164
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=97.6)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.6),PF054957=zf-CHY=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGCCTGGACCAGAAGAG
R:
GTGCTTTGGCTCCATTCCCAT
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types