HsaEX6094719 @ hg38
Exon Skipping
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:HGNC:33114]
Coordinates
chr19:36823285-36825692:-
Coord C1 exon
chr19:36825611-36825692
Coord A exon
chr19:36823667-36823790
Coord C2 exon
chr19:36823285-36823380
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGAATTATTCTTTCCAACAGTTG
3' ss Score
6.31
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTCTGCTTTCCCAGCACGCTGCCTCACCAAGAAAGAATCCAGAGAAGGACTGGTGGACTTGGAATGTTAAGTCATGGCCCAT
Seq A exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
Seq C2 exon
GTTTTTGCATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAGACAAGAGGACCTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGCACGCTGCC
R:
GGTCCTCTTGTCTCATCCCTCA
Band lengths:
165-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains