MmuEX7003735 @ mm10
Exon Skipping
Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:29823070-29825787:+
Coord C1 exon
chr7:29823070-29823144
Coord A exon
chr7:29824830-29824953
Coord C2 exon
chr7:29825692-29825787
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTTGTCTCATGGCAGGTA
3' ss Score
8.14
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAGCTGGCCTCATCGACATAGGAATCAAGACGAGGACTGACTGGCCACTTTTAGGAGTTTCCAATCATGGCCCAC
Seq A exon
GTAATGACATTCAGAGATGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAAGAGTTTATACCGAGATGTCATGCTGGAGAACTACAGCCACCTTGTCTCAGTGG
Seq C2 exon
GGCTTTGCATTTATCAACCGCATGGGTTCCCTGTGCCAGAGAAAGAGCAAGATGCCTGCATGGATTTGGGCAATGAGCCTAGCAGATTTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427-'1-11,'1-9,11-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTCATCGACATAGGA
R:
CAAAATCTGCTAGGCTCATTGC
Band lengths:
164-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types