HsaEX6094719 @ hg19
Exon Skipping
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:33114]
Coordinates
chr19:37314187-37316594:-
Coord C1 exon
chr19:37316513-37316594
Coord A exon
chr19:37314569-37314692
Coord C2 exon
chr19:37314187-37314282
Length
124 bp
Sequences
Splice sites
3' ss Seq
GGAATTATTCTTTCCAACAGTTG
3' ss Score
6.31
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTCTGCTTTCCCAGCACGCTGCCTCACCAAGAAAGAATCCAGAGAAGGACTGGTGGACTTGGAATGTTAAGTCATGGCCCAT
Seq A exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
Seq C2 exon
GTTTTTGCATTTATCAGCCAGAAGCGTTCTCTTTATTGGAGAAAGGGAAAGAGCCCTGGAAGATTTTGAGGGATGAGACAAGAGGACCTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGCACGCTGCC
R:
GGTCCTCTTGTCTCATCCCTCA
Band lengths:
165-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)