HsaEX0000960 @ hg38
Exon Skipping
Gene
ENSG00000167637 | ZNF283
Description
zinc finger protein 283 [Source:HGNC Symbol;Acc:HGNC:13077]
Coordinates
chr19:43831318-43841044:+
Coord C1 exon
chr19:43831318-43831381
Coord A exon
chr19:43835505-43835592
Coord C2 exon
chr19:43840886-43841044
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTTCGTTTTCCCTCCCCAGTTC
3' ss Score
9.31
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGAATCTTGACAGTGAATGTGTCTCATTACATTGAATAACAGCTACAGGATGTTCGAGAGCTG
Seq A exon
TTCTGGCTTTTCTGGATTCTGTGCTTCACCAATAGAGGAATCCCATGGAGCATTAATTAGTTCTTGCAATTCCAGAACCATGACTGAT
Seq C2 exon
TAGAGATGAGGTTTCACCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCCACCTCGGCCTCCCAAAATGCTAGGATTACAGGTGTGGCCCACCGCACCTGGCCAATGACAATCTGTCTTTCCAGCTCAATTGTTGCTTTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167637_MULTIEX1-5/8=3-8
Average complexity
C3
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PD(10.0=13.3)
C2:
PF0135222=KRAB=PD(16.7=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAGGATGTTCGAGAGCT
R:
GCAACAATTGAGCTGGAAAGACA
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development