HsaEX0073381 @ hg38
Exon Skipping
Gene
ENSG00000166526 | ZNF3
Description
zinc finger protein 3 [Source:HGNC Symbol;Acc:HGNC:13089]
Coordinates
chr7:100064033-100075261:-
Coord C1 exon
chr7:100075135-100075261
Coord A exon
chr7:100071267-100072212
Coord C2 exon
chr7:100064033-100064912
Length
946 bp
Sequences
Splice sites
3' ss Seq
TGCATTTTTTATTGTGTCAGATC
3' ss Score
7.47
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGCTGGTAACCTTTGAGGATGTAGCTGTGTACTTCATCCGGAAGGAGTGGAAGCGTTTGGAACCTGCTCAGAGGGACCTCTATAGAGATGTGATGCTGGAGAATTACGGGAATGTGTTCTCACTGG
Seq A exon
ATCGTGAGACCAGGACTGAAAATGATCAAGAAATTTCTGAAGACACAAGATCACATGGGGTCCTACTGGGAAGATTTCAAAAGGATATTTCTCAGGGTCTCAAGTTTAAAGAAGCCTATGAACGAGAAGTCAGTCTGAAAAGGCCGCTGGGGAACTCCCCTGGAGAAAGACTGAACAGGAAAATGCCAGATTTTGGTCAAGTGACAGTTGAGGAGAAGCTAACCCCCAGGGGAGAGAGAAGCGAGAAATATAATGATTTTGGGAACAGCTTCACTGTGAATTCCAACCTTATCTCACATCAGAGACTCCCCGTGGGAGACAGACCCCATAAGTGTGATGAATGTAGCAAGAGCTTTAATCGAACTTCAGACCTTATTCAACATCAGAGAATCCACACTGGGGAAAAGCCCTATGAATGTAATGAGTGTGGGAAGGCCTTCAGCCAGAGCTCACACCTTATTCAGCATCAGAGAATCCACACTGGGGAAAAACCTTATGAATGTAGTGATTGTGGGAAAACCTTCAGCTGTAGCTCTGCCCTCATTCTGCATCGGAGGATCCACACGGGGGAGAAACCCTATGAATGTAATGAGTGTGGGAAGACCTTCAGCTGGAGCTCCACCCTCACCCACCATCAGAGAATCCACACTGGTGAGAAACCCTACGCCTGCAATGAATGTGGGAAGGCCTTCAGCAGGAGCTCAACCCTTATTCACCATCAGAGAATCCACACTGGAGAAAAACCCTATGAATGTAATGAATGTGGGAAAGCCTTCAGCCAGAGCTCACACCTCTATCAGCACCAGAGAATCCACACTGGAGAGAAGCCCTACGAATGTATGGAATGTGGAGGAAAGTTTACCTACAGTTCAGGCCTTATTCAGCATCAAAGAATCCACACCGGGGAGAACCCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAG
Seq C2 exon
ACTGGATACACGTCTGTTTAACTACGCAAAAGGTAATGCTGGCATGGCTTACTGGGACCCTAAGTGTGGCGAAGGGACTCTGCTCCAGTGAACTGGCGAGTGTGGAACCTCCTGACACCTTCTGAGGACCTCCTGCCTGCCATGTTGCTGTGGAGCTCGCACTCCTCAGGCATCCCCTGATGTTGAGTGATACAAACTCTATCACCGGAATCGATGCTGCTGCAATGACAAGACTTCTTTCTGGTTTTCAGATTCTAAAGTTTAAAACAACGACAACAACAGGAGCGCTTGAAAGTTACGGTGCTTCTCCCTCTCCAGTGTGGACTCGCTGATGTTTGGAAAGATTGGACTTGCTACAGAAGGTCTTTCCACAGTGATGACACCAGTAGGGCTTTTCCCCGGTGTGGATTCTGTGGTGTTTATTGAAGTTGGAGCTGTGGTTGAAGGCTTTCCCACACTCCTTACACTTATATGGCTTCTCTCCGGTGTGGAGTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166526_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.295 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=7.9)
C2:
PF134651=zf-H2C2_2=PD(0.1=0.0)
Main Inclusion Isoform:
ENST00000413658fB8102
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACCTGCTCAGAGGGA
R:
CGCTCCTGTTGTTGTCGTTGT
Band lengths:
358-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development