HsaEX0073383 @ hg19

Exon Skipping

Gene

ENSG00000168661 | ZNF30

Description

zinc finger protein 30 [Source:HGNC Symbol;Acc:13090]

Coordinates

chr19:35424529-35436074:+

Coord C1 exon

chr19:35424529-35424627

Coord A exon

chr19:35433498-35433577

Coord C2 exon

chr19:35434127-35436074

Length

80 bp

Sequences

Splice sites

3' ss Seq

TTTATTTTAAACATGGATAGGAT

3' ss Score

3.95

5' ss Seq

AAGGTGAGA

5' ss Score

8.68

Exon sequences

Seq C1 exon

CAGGACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAAGAGCCTGAAGTGACAGTGAGGAAAGATGGAAGAAGATGGTGCACAG

Seq A exon

GATAAGAAAGCTCCAGTCTACAAACAAAACATGCCAGAAGATTTTTAGGCGATGATGCCACCTGCACATGGAACCAAAAG

Seq C2 exon

ATTTGCAGTTGGAAGATGATACAATCGGCTGTAAAGAAATGCCCACCTCTGAAAACTGTCCATCTTTTGCTCTACATCAGAAAATAAGTAGACAGAAACCACGTGAATGTCAGGAATATGGAAAGACCCTTTGTCAAGACTCAAAGCCTGTTCAACATGAAAGAATACATAGTAGTGAAAAACCCAACAGATGTAAAGAATGTGGGAAGAACTTTAGTAATGGACATCAACTCACCATACATCAGAGATTGCATGTTGGTGAGAAACCCTATAAATATGAAAAATGTGGGAAGGCCTTTATCAGTGGCTCAGCCTTTGTTAAGCATGGGAGAATTCACACTGGTGAGAAGCCACTCAAATGTAAGCAATGTGGAAAGACTATTAGTGGTAGCTATCAACTTACAGTACATAAGAGTATTCATACTGGGAAGAAACCATATGAGTGCGGGGAATGTGGGAAAGCTTTTCTAGTATATGGAAAGCTTACCCGGCATCAGAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000168661_CASSETTE2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. ATG)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.667 C2=0.029

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF097235=Zn-ribbon_8=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF097235=Zn-ribbon_8=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF097235=Zn-ribbon_8=WD(100=8.0),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

ENSP00000416457

Main Skipping Isoform:

ENSP00000303889

Other Inclusion Isoforms:

ENSP00000470094

Other Skipping Isoforms:

ENSP00000403441, ENSP00000469954

Associated events

Other assemblies

hg38

Conservation

Mouse

(mm10)

No conservation detected

Mouse

(mm9)

No conservation detected

Rat

(rn6)

No conservation detected

Cow

(bosTau6)

chr18:45874564-45874642

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

chr4:33444603-33444660

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

AGCCTGAAGTGACAGTGAGGA

R:

TCCATATTCCTGACATTCACGTGG

Band lengths:

167-247

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS

The Cancer Genome Atlas (TCGA)
Genotype-Tissue Expression Project (GTEx)
Autistic and control brains
Pre-implantation embryo development

Other AS DBs:

FasterDB (Includes CLIP-seq data)

AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)

APPRIS (Selection of principal isoform)

DEU primates (Only for human)

Special

HsaEX0073383 @ hg19

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

SPECIAL DATASETS