HsaEX0073383 @ hg38
Exon Skipping
Gene
ENSG00000168661 | ZNF30
Description
zinc finger protein 30 [Source:HGNC Symbol;Acc:HGNC:13090]
Coordinates
chr19:34933625-34945164:+
Coord C1 exon
chr19:34933625-34933723
Coord A exon
chr19:34942594-34942673
Coord C2 exon
chr19:34943223-34945164
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTAAACATGGATAGGAT
3' ss Score
3.95
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGGACATTCCCGTTCTAAACCACATGTGATCGCCTTATTGGAACAATGGAAAGAGCCTGAAGTGACAGTGAGGAAAGATGGAAGAAGATGGTGCACAG
Seq A exon
GATAAGAAAGCTCCAGTCTACAAACAAAACATGCCAGAAGATTTTTAGGCGATGATGCCACCTGCACATGGAACCAAAAG
Seq C2 exon
ATTTGCAGTTGGAAGATGATACAATCGGCTGTAAAGAAATGCCCACCTCTGAAAACTGTCCATCTTTTGCTCTACATCAGAAAATAAGTAGACAGAAACCACGTGAATGTCAGGAATATGGAAAGACCCTTTGTCAAGACTCAAAGCCTGTTCAACATGAAAGAATACATAGTAGTGAAAAACCCAACAGATGTAAAGAATGTGGGAAGAACTTTAGTAATGGACATCAACTCACCATACATCAGAGATTGCATGTTGGTGAGAAACCCTATAAATATGAAAAATGTGGGAAGGCCTTTATCAGTGGCTCAGCCTTTGTTAAGCATGGGAGAATTCACACTGGTGAGAAGCCACTCAAATGTAAGCAATGTGGAAAGACTATTAGTGGTAGCTATCAACTTACAGTACATAAGAGTATTCATACTGGGAAGAAACCATATGAGTGCGGGGAATGTGGGAAAGCTTTTCTAGTATATGGAAAGCTTACCCGGCATCAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168661_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAAGTGACAGTGAGGA
R:
TCCATATTCCTGACATTCACGTGG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development