HsaEX0073384 @ hg19
Exon Skipping
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]
Coordinates
chr5:150277990-150283539:-
Coord C1 exon
chr5:150283426-150283539
Coord A exon
chr5:150282703-150282744
Coord C2 exon
chr5:150277990-150278116
Length
42 bp
Sequences
Splice sites
3' ss Seq
CACCAGTTTTGCTTTTTCAGTCA
3' ss Score
5.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGTTTTGATACCCCCATATAAAATAATCTGTCTGTCATGGGAGCCCCCACGTCCTCTGAAATAGTTCAGCTCTGTCTGCATGACTTGTCCTGGGACTGAGGAAAATTTACCAG
Seq A exon
TCATCTGGCCTTTTGGAAGAGCAAAAAATGATGAAGTCCCAG
Seq C2 exon
GGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908-'1-4,'1-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.206 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF100774=DUF2314=PU(1.2=20.0)
C2:
PF0135222=KRAB=WD(100=95.3),PF100774=DUF2314=FE(48.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGACTTGTCCTGGGACTG
R:
TCTCCAGCATCACATCCCTGT
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)