HsaEX0073385 @ hg19
Exon Skipping
Gene
ENSG00000145908 | ZNF300
Description
zinc finger protein 300 [Source:HGNC Symbol;Acc:13091]
Coordinates
chr5:150277990-150282744:-
Coord C1 exon
chr5:150282703-150282744
Coord A exon
chr5:150281971-150282128
Coord C2 exon
chr5:150277990-150278116
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTACATGTTGTCTATAGCTT
3' ss Score
6.3
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TCATCTGGCCTTTTGGAAGAGCAAAAAATGATGAAGTCCCAG
Seq A exon
CTTTTTTCTAGCTACAATGGCAGAGTTGAGTAGTTACAACAGAAACCGTATGGCCTGCAATGCCAAAAATGTAAACTTTACTGAAAAAGTTTGTTGACCCCTGCTTTCAAGGAACAAATTGATTACAGATGCTTCCTATTGTCCAGCTTTATCCACAG
Seq C2 exon
GGGTTAGTATCATTCAAGGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAACTTGACCCTTCTCAGAGGACCCTGTACAGGGATGTGATGCTGGAGAACTACAGCCACCTGGTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145908_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF100774=DUF2314=PU(1.2=20.0)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3),PF100774=DUF2314=FE(48.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCCTTTTGGAAGAGCAA
R:
TGAGACCAGGTGGCTGTAGTT
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)