HsaEX0073386 @ hg38
Exon Skipping
Gene
ENSG00000089335 | ZNF302
Description
zinc finger protein 302 [Source:HGNC Symbol;Acc:HGNC:13848]
Coordinates
chr19:34678737-34682897:+
Coord C1 exon
chr19:34678737-34678813
Coord A exon
chr19:34679828-34679959
Coord C2 exon
chr19:34682777-34682897
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGTTGACTGTTATAGCGT
3' ss Score
7.83
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GACACTGCCCATCTCTAAGATAAGAACCTGGAAAGGGGACTCTGTTGGCCATTGGAAATTGCAGAATAATGTCTCAG
Seq A exon
CGTCAGTACCCAGAGTGTTACCTGGCACCAAATGGATGCTTAGTAAGTAATTGTGGAGTGAATAAGATGAGTAATGAAGAACTGGTGGGGCAGAATCATGGCATGGAAGGTGAAGCTTGCACAGGAGGGGAT
Seq C2 exon
GTGACATTTAGTGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCCTAGATTCTGCTCAGAGGGACTTATACAAGGATGTGATGGTCCAGAATTATGAGAACCTGGTCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089335_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCCCATCTCTAAGATAAGA
R:
CAGAGACCAGGTTCTCATAATTCTGG
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development