HsaINT1047372 @ hg38
Intron Retention
Gene
ENSG00000089335 | ZNF302
Description
zinc finger protein 302 [Source:HGNC Symbol;Acc:HGNC:13848]
Coordinates
chr19:34678737-34682897:+
Coord C1 exon
chr19:34678737-34678813
Coord A exon
chr19:34678814-34682776
Coord C2 exon
chr19:34682777-34682897
Length
3963 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AAATATATTTGCTATTTCAGGTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
GACACTGCCCATCTCTAAGATAAGAACCTGGAAAGGGGACTCTGTTGGCCATTGGAAATTGCAGAATAATGTCTCAG
Seq A exon
GTAAGTCGGTGTGTCCCCAAATCTTCCTGAAACACTTTATTAGGCCTCTGTGTGTTTGCTTTGCTTCTCCTGCCTGTTCCCACCTAATCAAGTCCATTTAAGGGACTAGATCTATGGTTCCTTTCACTATAGGAAGAATGGAGCCCACAGGAGAGCTCCAAGGTATTGTCCTCATCACCCAGTGTTCCTCTTTTCTACAGTTTTCTGCTAGAAGACTTTCTAGATTGCCAACATTTTAAAACTGTAATTCACAATGCAACTTTGGAATGTAAGGTTATTCGGTTTATGGTTGTCAAAACTGTACCATGTGGTCTCAAGTGAAGAGATGTTTGGAGTCATCCTTGATTCTTCCTTTTGACTTATAACTCATATTCAGGTCCTCTAGTTTGGATCTAAACGATACACCGTATACAGCATCTGACCATTAGTTAGCCCATCACCACCACCACCACTACCACCCCAGTCCGAGCCACCTGGATTATTGCGGTAGCCTCCTAGCTGGATTCCCAGCATCTGCCCTTAACCCTCATCAGTCTGTTCTCAGTACAGCTGTGACCATGGTCCTATTGTTATATAAATTCCTGTCATTCCGCAACCTAAAATTTTTCAGTGGTTCTAACTGAGTCACTTCTGCAATGACCTATTTGTACAATTAGGCCATTACCTCCCTGATCCCACCTTCCTTCTCTGCCTCCTCATTCCTGTGCGCTCCAGCCTCTGTCACCAGTTGCTGTGCCATCCACGTGGAATATTCTTCCCCCACATACGCACAAGCTTGCATCCTTATCTCCTTCTGTGTTTGTTCCGTGGTTACTTTCTCAGAACAGCTTCCCTGAAAGCCTATTTGCAATTGCAGTCACCTTCCCTAGCGCTTCCACTCCTCCATCACTGCTTTGTTGTTTTCCACAGTGTGTGTCACTCACTAGCTGATGTACTGTATGTTCAGTATATGCACGTGCTCATTGTCTGTTCCTGGTGGGAGGAATGCTTTTTCTTCTTTGTTGACTGTTATAGCGTCAGTACCCAGAGTGTTACCTGGCACCAAATGGATGCTTAGTAAGTAATTGTGGAGTGAATAAGATGAGTAATGAAGAACTGGTGGGGCAGAATCATGGCATGGAAGGTGAAGCTTGCACAGGAGGGGATGTAAGTAGCAGATGTACATCTTGGGTGAAGTCTGTTTTCATGGAATAATTAAGATAATTAGAATTGAAAAACTGGTGTGGTAGTGCATGCCTGTTGTCCCAGTTACTCGGGAGGCTGATGAGGTAGGAAGATTTCTTGAGCCCTCTGGTGTAAGCCTGTAGTGAGCTATGATTATGTCACTGCACTCCAGCTTGGTGACAGAGCAAGAACCTGCCTCTTGAAAGAAAAAACAAAGTAAAGGCTAAAGTGAACTAATGCCAAAACCATTCATTGGTTCATCTTCTAAACACTTATGAAGTACCTGTTAGGAAGAGTTGTACATGGATTTTGGTGTACACTGACACACAGGACTTCATGATCTAGTGCAGTATTGTCTAAGAGAACTTTCTGCAGTGGTGGAAGTGCTGTGCATGTGTACTGATCAGTACGGTAGCCAACAGCCCCATCTGACTATTGAGTACTTGAACTGTGGCTTAAGCAATGGAGAAAATAAATTTTAAATTTTATTTAATTATTTTATTTTTACATTTTAATTAATTTAAATGTTGTAGCCAAGTTGGCTAGTGGCTCCTGTATTGAAGATTGTGGCACTGGTAGAAAAGTAAGAAAGCATGGGAAATTTAAATAAGTGCTAGGATAGATATCCTATGTTCTTTTGGGAACTGAGATGAGTGAACATCTCAAGCTGCCCAGGCAACTGAAGGGGAAGAAAGAAGCATCCCTGGCTCTAAGTTGTAATGACTGGTTTGTCAAAGATATGAGAAATGTTATTTTTATTTGGGATATAGGCAATTAACACAGTGGCAACTCCAATTAACAGGTGAATTTAGAAGAAATTTTGTGTAGCAAATTGAACTGTCAAATCTTACTTGAGGATAAGTTATTGTTTATTTGGAAAATGTGTGTTGGATTGTATCTGCTTGCCTATATAAAAAGATGAGATTTCTTCCTGTCCTTTTCATCTCAATAGTGGATCGCTTGTGAAGTGCATCAAGGTCTGATTTAGCTTATTCAGTAATAAAACTGCTTTCTTTTTTTTTCTACATTTGTGGAGAGGATTTTCTGCCATTGGAAGGCGATTCGAATTTTAATTATTTTCTCCAAACCTGAGAAAAGTAAATTCTGCCTTTAAAACCAAAGATCCATGTCACTGGTGAACATGCATGCAAAATATCCAAATAAAGTAATACAATACTGAATGAACTCTCAGAGCTAAAAAATTACCACAGTAGAGCAGTCTGTTTTACAAATCACAGACAGTAATAACTCTGTATTAAATGGCTGTACTTTTTGCACATATTATAATTTGACTAGCCAATAAGCTATTATTGAATATTTAAACTTCTAAAGTTTTACTATTTTAAATAATACTGTGAAATGAGTACTATTGAGAAGAATTTCTAAGCACATCTGTGAGCATTTCCTTAGAATATTTTCTTTGAAATCTACTCTTATTTTTTTCCCCTTCCAGGTCCTATTTAAGGACTGTCTATGGCAGGAGTCCTCAACCTTTTTGACACCAGGGATCAGTTTCGTGGAAGACAATTTTTCCACGGAAGTGGGAGGTGGTGGAGGTGATGGTTTGGGGATGAAACCGTTCTACCTCAGATCATCAGGCATTAGATTGACATAAGGAGTGTGCAACTTCGATCCCTTGCATGTGCAGTTCACAGTAGGGATTGCGCTCCTGTAAGAATCTATGCTATAGCTGATCTGACAGCAGGTGGAGCTCGGGTGATAATGCTCTTTCCTGCCACTCACCTCCTGCTGTGTTGCCCGGTTCCTAAAGGCCACAGACCAGTACCAGTCCGTGGCCCAGGTGTTAGACCCCTGATCTATGACATGAAACCATCCTTCAGTCTTTTCACCCAGGAGTCTCATATTTTAATTATTAAATGTTTGTCAGCACGAAGTTTAAGTATACACCACAAATATATTTTTCTTTTTTGTTTATGAATCAGTTATGTGTATGTTTTAGTCCATTTGTGCTGCTGTAACAAATACCCCAGACTGAGTAGTTTATAAATAATGAAAATTGACTTCTCATGGTTTTGGTGCCTGGGAAGTCCAAGATCAAGAGGCAGGCATCTGGCAAGGGCCTTCTTGCTGTGTCCTTTTGTGGTGGATGGGCAAAGAGACGAGAGAGAGGCAAAGGGGGGCCAGAACTCATTTTTTTAAATAAGGAACCCTCTTCCCTGATGATGACATTAATCCATTCATGAGGGCAGAGTCCTCAAGGCCCAATAGTCTCCTAAAGATCTAACCTCTCAATACTATTAGAATGGTGATTAAGTTCAATACATGCTTTTTTGGGGAACATAATCAAACCATATGTCTATCAGTCTTTAATATTAAGATGTCTTTTTTTTCTGAACCCATTTTTTGTGAGATTTAGTGAATCTTTCTGAGTATCATATTTGAGAGACAATTGCTTTAGCCTTATTTTTAATTACTTAGCTAGCATGTAAGCTATAAAAGATATAACTAAATACTTGACTCTGTGCTGTCAAATGTCAAATGTTGATTTTTAAAAATTCATATAATTCTAAACTTTTAACAAAATTACTGAAGCAAAGCTCTCATATTTGTCTCTCATTCTTATTGTATAAAAATTCTAAGCACATAACTGTCCCCTTTATTGTATAATTCCAACTACATAACTGTCCTATTATTACTTACCTGACATCACATTCCCAGTCATTGTCACAGCTCCTGAATCTTGTTCCATTTCTTCCACAAGCAGGCTAATTTTACCCCTTCTTCAGTGACAGAAGAGGCCTGGGCTATGGCTGAGCCTAAATATATTTGCTATTTCAG
Seq C2 exon
GTGACATTTAGTGATGTGGCTATAGACTTCTCTCATGAAGAGTGGGCATGCCTAGATTCTGCTCAGAGGGACTTATACAAGGATGTGATGGTCCAGAATTATGAGAACCTGGTCTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089335:ENST00000457781:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains