HsaEX0073407 @ hg19
Exon Skipping
Gene
ENSG00000182986 | ZNF320
Description
zinc finger protein 320 [Source:HGNC Symbol;Acc:13842]
Coordinates
chr19:53397379-53466114:-
Coord C1 exon
chr19:53465980-53466114
Coord A exon
chr19:53398592-53398688
Coord C2 exon
chr19:53397379-53397473
Length
97 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTCTTATTGCCCAGGCT
3' ss Score
6.61
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
CGTGGACTGAAAGTTGCACGGCGGCGTGTGCGTTTCCTAGTTGTCTGGTGCTGCTATATAGGGGACGTGGGGTCCCCACAGACCTGCAGGTTCCGGCCCCTCTTTTCTCAACCCAGAGCAAATTGAAACGTCCGG
Seq A exon
GCTGGAGTGCAATGGCGCGATCTTGGCTCACCACAACCTCCGCCTCCTGGGTTCAAGTGATCTCCTGCCTCAGCCTCCCCAGTAGCCGGGATTACAG
Seq C2 exon
TAGAGACAAGGTTTCACCATATTGGCCAGACTGTTCTCTGAACTCGACCTCAAGTGATCCACCCACCTCGGCCTCCCAGAGTCCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182986-'1-2,'1-1,2-2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAGTTGTCTGGTGCTGCT
R:
AGGTGGGTGGATCACTTGAGG
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)