HsaEX0073412 @ hg19
Exon Skipping
Gene
ENSG00000221874 | ZNF321
Description
zinc finger protein 321, pseudogene [Source:HGNC Symbol;Acc:13827]
Coordinates
chr19:53430388-53445847:-
Coord C1 exon
chr19:53445794-53445847
Coord A exon
chr19:53433208-53433323
Coord C2 exon
chr19:53430388-53432667
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTGAAACAAAGTCT
3' ss Score
0.83
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
AGATTCGCACAAACCCGGAAGCGGGTCGCGTGGAGTGACGGTCCCACCGCGGGG
Seq A exon
TCTGACTTTGTCGCCCAGGCTTAATTGCAGTGGTGCGATCTCGGCTCACTGCAACTTCTCCCTCCCAGGTTCAAGCAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGAATACAG
Seq C2 exon
ATATCTCTTCCAAATGCATGATGAAGGAGTTCTCATCCACAGCGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTAGAGATTTTTGCTTCCAGGAAATTGAGAAAGATATTCATAACTTTGAGTTTCAGTGGCAAGAAGAGGAAAGGAATGGTCACGAAGCACCCATGACAGAAATCAAAGAGTTGACTGGTAGTACAGACCGACATGATCAAAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCCAGCTTTCATTCGCATCTGCCTGAACTCCACATATTTCAGCCTGAATGGAAAATTGGTAATCAAGTTGAGAAGTCTATCATCAATGCCTCCTTAATTTTGACATCCCAAAGAATTTCTTGTAGTCCCAAAACCCGTATTTCTAATAACTATGGGAATAATTCCCTCCATTCTTCATTACCCATACAAAAATTGGGAAGTACACATGAGAGAAAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221874-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCGCACAAACCCGGAAG
R:
ATGGGTGCTTCGTGACCATTC
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)