HsaEX0073420 @ hg19
Exon Skipping
Gene
ENSG00000249471 | ZNF324B
Description
zinc finger protein 324B [Source:HGNC Symbol;Acc:33107]
Coordinates
chr19:58962971-58965189:+
Coord C1 exon
chr19:58962971-58963071
Coord A exon
chr19:58963495-58964149
Coord C2 exon
chr19:58965063-58965189
Length
655 bp
Sequences
Splice sites
3' ss Seq
GTGCAAACTCCTGCGTCCAGGGC
3' ss Score
3.98
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
ACTTCCGGCGTTGGGACTGTCACTTGGCTGCTCGCGTCAGGCCACACCGGTGGTCTGGGCTGTGGCGCGCGGGTCGGGGCCCGAGGCGGGCGGCCAGGAAG
Seq A exon
GGCACTGGTGAGCTCCCGACTTCCGGCAGCCAGGGGGCTGAGGTCCCGAAGGAGGCTCCGAGGGGAGAGTCCTGCGTGTGCAAAACCTGGGAGGGGAGCCGAAGCCCAGATGCTTCTGGGACTGAGCGCTCTCGATGTGGAGCTGGAGTAGAGGGGATGTGTGCGGCTGCAGTAGCAGGCGAGGGAGTGGGCTTTATCTCGAGGGCGTCGGGAGACATAGAAGTTTTGAACAGAATCAGGACATCCTCTGAGTTGGGACTTTAAAACGGTTCCACCGTTTGTTGCGTGGAGAACAGACATGCAGGGGTGTCGGCATGAAGGGAAGAACCGACTGCCACAGTCTGGGCAGCAGTGGAGGTGGGCGACCAGGTGAATTCTGGTGGATCTGCGGATGCATCAGGTGTGGGCTGTTTGAAGAACTAAGTACCCCATGTTGTTCAGCCTGAGCGCCTGGAAGAAGAGAGCTGCTGTAGATAGAAAGGAGAATTGAAAGGAAAGCAGGTTTCCTTCAGGGGAAAGATCAAGAGTCTGGGATGTCCCAGGTTGGTCATGTCACTGGACCTGACGTTGTTGGTGTCCTGGGCTGAGGACAGGGCCTATAAACTGGACTGAAGAAGGCGATGAGCAGTCAGGCGTGCGGAGTTACAGCTTGAGG
Seq C2 exon
GACCTGATGACCTTCGAGGATGTGGCCGTGTACTTCTCCCAGGAGGAGTGGGGGCTCCTGGACACAGCGCAGAGGGCCCTGTACCGCCACGTGATGCTGGAAAACTTCACACTTGTGACCTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249471_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCGGCGTTGGGACT
R:
ACAAGTGTGAAGTTTTCCAGCA
Band lengths:
217-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)