HsaEX0073466 @ hg19
Exon Skipping
Gene
ENSG00000196693 | ZNF33B
Description
zinc finger protein 33B [Source:HGNC Symbol;Acc:13097]
Coordinates
chr10:43090043-43127472:-
Coord C1 exon
chr10:43127377-43127472
Coord A exon
chr10:43109730-43109806
Coord C2 exon
chr10:43090043-43090147
Length
77 bp
Sequences
Splice sites
3' ss Seq
TAGTTGTTATGTCTCTTTAGGCT
3' ss Score
6.79
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGTATTGTGCTCACAAACCAGAGGTGATCTTCAGGCTGGAACAAGGAGAAGAACCATGGAGACTGGAGGAAGAATTCCCAAGCCAGAGCTTTCCAG
Seq A exon
GCTCCTCTTGGCTATGGTGGTTTCCCAGACTTTCCTTGTTTTGGATGACCTTGACAGTTTGGAGGAATCCTGGTGAG
Seq C2 exon
AAGTCTGGACAGCTGATCACCTGAAAGAGAGGAGCCAAGAAAATCAATCTAAACATTTGTGGGAAGTTGTATTCATCAATAATGAAATGCTGACTAAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196693-'5-12,'5-6,8-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.063
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF079757=C1_4=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF079757=C1_4=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.4),PF079757=C1_4=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTGATCTTCAGGCTGGA
R:
CTTGTTCCTTAGTCAGCATTTCA
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)